| | zurück Dieses Programm auf allen Clustern suchen | | Kategorie/Name/Version | bio/bowtie2/2.1.0 | | Cluster | bwUniCluster (für ALLE verfügbar!) | | Nachricht/Übersicht | | Konflikte
Preregs =Abhängigkeiten | conflict bio/bowtie2 | | Lizenz | GPLv3 | | URL | | | What-is | bio/bowtie2/2.1.0 : 2.1.0 Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.
It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes. | | Hilfe-Text | Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.
It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.
Basic information about the package and its components can be found
in the doc folder distributed with this software module:
/opt/bwhpc/common/bio/bowtie2/2.1.0/doc
More information about Bowtie2 can be found on the website:
http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
A Demo for using the Bowtie2 package can be found in
/opt/bwhpc/common/bio/bowtie2/2.1.0/examples
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In case of problems, please contact '<REPLACE_DURING_INSTALL>'.
It is not guaranteed that this module is available at other bwGRiD sites. | | Support | bwHPC Support-Portal
| | Installationsdatum | 05.10.2017 | | Löschdatum | | | Best-Practice-Wiki | http://www.bwhpc-c5.de/wiki/index.php/Bowtie2 |
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