| | zurück Dieses Programm auf allen Clustern suchen | | Kategorie/Name/Version | bio/tophat/2.0.11 | | Cluster | bwUniCluster (für ALLE verfügbar!) | | Nachricht/Übersicht | | Konflikte
Preregs =Abhängigkeiten | conflict bio/tophat
prereq module load bio/bowtie2/2.1.0
prereq module load bio/samtools/0.1.19 | | Lizenz | GPLv3. | | URL | | | What-is | bio/tophat/2.0.11 : 2.0.11 TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. | | Hilfe-Text | TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
Basic information about the package and its components can be found
in the doc folder distributed with this software module:
/opt/bwhpc/common/bio/tophat/2.0.11/doc
More information about TopHat can be found on the website:
http://tophat.cbcb.umd.edu/tutorial.shtml
A Demo for using the TopHat package can be found in
/opt/bwhpc/common/bio/tophat/2.0.11/examples
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In case of problems, please contact 'hpcmaster@uni-tuebingen.de'.
It is not guaranteed that this module is available at other bwGRiD sites. | | Support | bwHPC Support-Portal
| | Installationsdatum | 05.10.2017 | | Löschdatum | | | Best-Practice-Wiki | |
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