| Hilfe-Text | GffCompare provides classification and reference annotation mapping and
matching statistics for RNA-Seq assemblies (transfrags) or other generic
GFF/GTF files.
GffCompare also clusters and tracks transcripts across multiple GFF/GTF
files (samples), writing matching transcripts (identical intron chains)
into <outprefix>.tracking, and a GTF file <outprefix>.combined.gtf which
contains a nonredundant set of transcripts across all input files (with
a single representative transfrag chosen for each clique of matching
transfrags across samples).
DOCUMENTATION/FAQ
Home :
Manual/web :
FAQ :
Examples : n./a.
The command line executable 'gffcompare' of this module can be found in the folder:
/opt/bwhpc/common/bio/gffcompare/0.9.8
The PATH is set to this folder, too.
Type 'gffcompare' without any options to see the command-line parameters.
In case of problems, please contact 'rainer.rutka@uni-konstanz.de'. |