| | zurück Dieses Programm auf allen Clustern suchen | | Kategorie/Name/Version | bio/cufflinks/2.2.0 | | Cluster | bwUniCluster (für ALLE verfügbar!) | | Nachricht/Übersicht | | Konflikte
Preregs =Abhängigkeiten | conflict bio/cufflinks | | Lizenz | Free for scientific research. | | URL | | | What-is | bio/cufflinks/2.2.0 : 2.2.0 Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one, taking into account biases in library preparation protocols. | | Hilfe-Text | Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one, taking into account biases in library preparation protocols.
Basic information about the package and its components can be found
in the doc folder distributed with this software module:
/opt/bwhpc/common/bio/cufflinks/2.2.0/doc
More information about Cufflinks can be found on the website:
http://cufflinks.cbcb.umd.edu/
A Demo for using the Cufflinks package can be found in
/opt/bwhpc/common/bio/cufflinks/2.2.0/examples
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In case of problems, please contact 'hpcmaster@uni-tuebingen.de'.
It is not guaranteed that this module is available at other bwUniCluster sites. | | Support | bwHPC Support-Portal
| | Installationsdatum | 05.10.2017 | | Löschdatum | | | Best-Practice-Wiki | |
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