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Kategorie/Name/Versionbio/smalt/0.7.6
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conflict bio/smalt
LizenzGPL V3 http://www.gnu.org/copyleft/gpl.html, MIT License
URL http://www.sanger.ac.uk/science/tools/smalt-0
What-isbio/smalt/0.7.6 : Smalt 0.7.6 Smalt is a program for aligning sequencing reads against a large reference genome (e.g. human genome).
Hilfe-Text
DESCRIPTION
   Smalt is a software package for mapping low-divergent sequences 
   against a large reference genome, such as the human genome.
   It has two major components, one for read shorter than 150bp 
   and the other for longer reads.  

   It consists of three algorithms: 
   * Smalt-backtrack, 
   * Smalt-SW and 
   * Smalt-MEM. 

   The first algorithm is designed for Illumina sequence reads up to 100bp,
   while the rest two for longer sequences ranged from 70bp to 1Mbp.
   Smalt-MEM and Smalt-SW share similar features such as long-read support
   and split alignment, but Smalt-MEM, which is the latest, is generally
   recommended for high-quality queries as it is faster and more accurate.
   Smalt-MEM also has better performance than Smalt-backtrack for 70-100bp
   Illumina reads. 

DOCUMENTATION

*  Get started
   http://www.sanger.ac.uk/science/tools/smalt-0

*  Smalt documentation
   http://sourceforge.net/projects/smalt/files/smalt_manual.pdf   

*  Smalt repository (binaries/sources)
   http://sourceforge.net/projects/smalt/ 

*  bwHPC examples and a moab example script can be found here:
   /opt/bwhpc/common/bio/smalt/0.7.6/bwhpc-examples
   Please read the 'README.bwhpc-examples' file.

CITING

   SMALT is Copyright (C) 2010 - 2015  Genome Research Ltd.

In case of problems, please contact: bwhpc (at) uni-konstanz.de

This module is available for all users.
SupportbwHPC Support-Portal
Installationsdatum05.10.2017
Löschdatum
Best-Practice-Wikihttp://www.bwhpc-c5.de/wiki/index.php/Smalt