conflict bio/fastqc

Most high throughput sequencers generate output in FastQ format. This
format combines the base calls for the sequence which was generated with
an encoded quality value for each base which says how confident the
sequencer was that the base call generated was correct.

Before proceeding with the analysis of a sequence data set it is
a good idea to do some basic quality control checks on the raw data
to ensure that there are no hidden problems which might be more
difficult to detect at a later stage.

DOCUMENTATION

* Homepage
  https://www.bioinformatics.babraham.ac.uk/projects/fastqc

* Main instructions
  /opt/bwhpc/common/bio/fastqc/0.11.8/README.txt

* Tool Documentation
  /opt/bwhpc/common/bio/fastqc/0.11.8/Help
  https://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help

* Repository / Sources
  https://www.bioinformatics.babraham.ac.uk/projects/download.html#fastqc

* Templates and examples
  /opt/bwhpc/common/bio/fastqc/0.11.8/Templates
  https://www.bioinformatics.babraham.ac.uk/projects/fastqc

* bwHPC examples and a moab example script can be found here:
  /opt/bwhpc/common/bio/fastqc/0.11.8/bwhpc-examples
  Fastqc will run multithreaded (6 threads aÂŽ 250 MB).

* Start FASTQC (it's a wrapper!)
  "fastqc"

In case of problems, please contact: bwhpc (at) uni-konstanz.de

This module is available for all users.