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Kategorie/Name/Versionbio/igv/bio-igv-2.3
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conflict bio/igv
LizenzLGPL, MIT - http://opensource.org/licenses/MIT
URL http://www.broadinstitute.org/software/igv/home
What-isbio/igv/bio-igv-2.3 : The Integrative Genomics Viewer 2.3 (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. (command 'igv')
Hilfe-Text
DESCRIPTION

  The Integrative Genomics Viewer (IGV) is a high-performance
  visualization tool for interactive exploration of large,
  integrated genomic datasets. It supports a wide variety
  of data types, including array-based and next-generation
  sequence data, and genomic annotations.

DOCUMENTATION

*  Get started and FAQs
   Read the 
   /opt/bwhpc/common/bio/igv/2.3/readme.txt 
   and 
   /opt/bwhpc/common/bio/igv/2.3/IGVTools/igvtools_readme.txt 
   files at first.

*  IGV User Guide and Documents
   http://www.broadinstitute.org/software/igv/UserGuide

*  IGV Downloads
   http://www.broadinstitute.org/software/igv/download 
  
*  bwHPC examples and a moab example script can be found here:
   /opt/bwhpc/common/bio/igv/2.3/bwhpc-examples
   Please read the 'README.bwhpc-examples' file.

CITING

   James T. Robinson, Helga Thorvaldsdóttir, Wendy Winckler,
   Mitchell Guttman, Eric S. Lander, Gad Getz, Jill P. Mesirov.
   Integrative Genomics Viewer. Nature Biotechnology 29, 24–26 (2011)

   Helga Thorvaldsdóttir, James T. Robinson, Jill P. Mesirov.
   Integrative Genomics Viewer (IGV): high-performance genomics
   data visualization and exploration.
   Briefings in Bioinformatics 14, 178-192 (2013).

IMPORTANT

   Before using IGV the first time, go to your $HOME folder,
   load this module and start 'igv' the first time.
   Some initialisations will be done. Be patient! This happens
   only once.

In case of problems, please contact: bwhpc (at) uni-konstanz.de

This module is available for all users.
SupportbwHPC Support-Portal
Installationsdatum05.10.2017
Löschdatum
Best-Practice-Wikihttp://www.bwhpc-c5.de/wiki/index.php/Integrative-Genomics-Viewer