| Hilfe-Text | DESCRIPTION
The Integrative Genomics Viewer (IGV) is a high-performance
visualization tool for interactive exploration of large,
integrated genomic datasets. It supports a wide variety
of data types, including array-based and next-generation
sequence data, and genomic annotations.
DOCUMENTATION
* Get started and FAQs
Read the
/opt/bwhpc/common/bio/igv/2.3/readme.txt
and
/opt/bwhpc/common/bio/igv/2.3/IGVTools/igvtools_readme.txt
files at first.
* IGV User Guide and Documents
http://www.broadinstitute.org/software/igv/UserGuide
* IGV Downloads
http://www.broadinstitute.org/software/igv/download
* bwHPC examples and a moab example script can be found here:
/opt/bwhpc/common/bio/igv/2.3/bwhpc-examples
Please read the 'README.bwhpc-examples' file.
CITING
James T. Robinson, Helga Thorvaldsdóttir, Wendy Winckler,
Mitchell Guttman, Eric S. Lander, Gad Getz, Jill P. Mesirov.
Integrative Genomics Viewer. Nature Biotechnology 29, 24–26 (2011)
Helga Thorvaldsdóttir, James T. Robinson, Jill P. Mesirov.
Integrative Genomics Viewer (IGV): high-performance genomics
data visualization and exploration.
Briefings in Bioinformatics 14, 178-192 (2013).
IMPORTANT
Before using IGV the first time, go to your $HOME folder,
load this module and start 'igv' the first time.
Some initialisations will be done. Be patient! This happens
only once.
In case of problems, please contact: bwhpc (at) uni-konstanz.de
This module is available for all users. |